Fields
pmd_beamphysics.FieldMesh
FieldMesh(h5=None, data=None)
Class for openPMD External Field Mesh data.
Initialized on on openPMD beamphysics particle group:
- h5: open h5 handle, or str that is a file
- data: raw data
The required data is stored in ._data, and consists of dicts:
'attrs'
'components'
Component data is always 3D.
Initialization from openPMD-beamphysics HDF5 file:
FieldMesh('file.h5')
Initialization from a data dict:
FieldMesh(data=data)
Derived properties:
.r
,.theta
,.z
.Br
,.Btheta
,.Bz
.Er
,.Etheta
,.Ez
-
.E
,.B
-
.phase
.scale
-
.factor
-
.harmonic
-
.frequency
-
.shape
.geometry
.mins
,.maxs
,.deltas
.meshgrid
.dr
,.dtheta
,.dz
Booleans:
.is_pure_electric
.is_pure_magnetic
.is_static
Units and labels
.units
.axis_labels
Plotting:
.plot
.plot_onaxis
Writers
.write
.write_astra_1d
.write_astra_3d
.write_gpt
.write_impact_emfield_cartesian
.to_cylindrical
.to_astra_1d
.to_impact_solrf
.to_impact_impact_emfield_cartesian
.write_gpt
.write_superfish
Constructors (class methods):
.from_ansys_ascii_3d
.from_astra_3d
.from_superfish
.from_onaxis
.expand_onaxis
Source code in pmd_beamphysics/fields/fieldmesh.py
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Attributes
pmd_beamphysics.FieldMesh.axis_labels
property
axis_labels
pmd_beamphysics.FieldMesh.coord_vecs
property
coord_vecs
Uses gridSpacing, gridSize, and gridOriginOffset to return coordinate vectors.
pmd_beamphysics.FieldMesh.factor
property
factor
factor to multiply fields by, possibly complex.
factor = scale * exp(i*phase)
pmd_beamphysics.FieldMesh.is_pure_electric
property
is_pure_electric
Returns True if there are no non-zero mageneticField components
pmd_beamphysics.FieldMesh.is_pure_magnetic
property
is_pure_magnetic
Returns True if there are no non-zero electricField components
pmd_beamphysics.FieldMesh.meshgrid
property
meshgrid
Usses coordinate vectors to produce a standard numpy meshgrids.
pmd_beamphysics.FieldMesh.phase
property
writable
phase
Returns the complex argument phi = -2*pi*RFphase
to multiply the oscillating field by.
Can be set.
Functions
pmd_beamphysics.FieldMesh.axis_index
axis_index(key)
Returns axis index for a named axis label key.
Examples:
.axis_labels == ('x', 'y', 'z')
.axis_index('z')
returns2
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.axis_points
axis_points(axis_label)
Returns 3D points for the specified axis to be used by the interpolator.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
axis_label
|
str
|
The label of the coordinate axis. Example: 'r' for cylindrical geometries. |
required |
Returns:
Type | Description |
---|---|
numpy.ndarray of shape (n, 3)
|
An array of 3D points, where the specified axis is populated, and other axes are zero. |
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.axis_values
axis_values(axis_label, field_key, **kwargs)
Returns the values of the specified field along the given axis, allowing for partial replacement of points.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
axis_label
|
str
|
The label of the coordinate axis. |
required |
field_key
|
str
|
The key representing the field data to interpolate. |
required |
**kwargs
|
dict
|
Key-value pairs to replace parts of the internal points array.
The keys should be axis labels, and the values should be the corresponding values to set.
Example: |
{}
|
Returns:
Type | Description |
---|---|
tuple(ndarray, ndarray)
|
A tuple containing: - An array of coordinate values along the specified axis. - An array of interpolated field values at the corresponding points. |
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.component_is_zero
component_is_zero(key)
Returns True if all elements in a component are zero.
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.coord_vec
coord_vec(key)
Gets the coordinate vector from a named axis key.
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.copy
copy()
Returns a deep copy
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.from_ansys_ascii_3d
classmethod
from_ansys_ascii_3d(*, efile=None, hfile=None, frequency=None)
Class method to return a FieldMesh from ANSYS ASCII files.
The format of each file is: header1 (ignored) header2 (ignored) x y z re_fx im_fx re_fy im_fy re_fz im_fz ... in C order, with oscillations as exp(iomegat)
Parameters:
Name | Type | Description | Default |
---|---|---|---|
efile
|
Filename with complex electric field data in V/m |
None
|
|
hfile
|
Filename with complex magnetic H field data in A/m |
None
|
|
frequency
|
Frequency in Hz |
None
|
Returns:
Type | Description |
---|---|
FieldMesh
|
|
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.from_astra_3d
classmethod
from_astra_3d(common_filename, frequency=0)
Class method to parse multiple 3D astra fieldmap files, based on the common filename.
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.from_impact_emfield_cartesian
classmethod
from_impact_emfield_cartesian(filename, frequency=0, eleAnchorPt='beginning')
Class method to read an Impact-T style 1Tv3.T7 file corresponding to
the 111: EMfldCart
element.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
filename
|
str
|
Path to the file where the field data will be written. |
required |
frequency
|
float
|
Fundamental frequency in Hz This simply adds 'fundamentalFrequency' to attrs default=0 |
0
|
Returns:
Type | Description |
---|---|
FieldMesh
|
|
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.from_onaxis
classmethod
from_onaxis(*, z=None, Bz=None, Ez=None, frequency=0, harmonic=None, eleAnchorPt='beginning')
Parameters:
Name | Type | Description | Default |
---|---|---|---|
z
|
z-coordinates. Must be regularly spaced. |
None
|
|
Bz
|
magnetic field at r=0 in T Default: None |
None
|
|
Ez
|
Electric field at r=0 in V/m Default: None |
None
|
|
frequency
|
fundamental frequency in Hz. Default: 0 |
0
|
|
harmonic
|
Harmonic of the fundamental the field actually oscillates at. Default: 1 if frequency !=0, otherwise 0. |
None
|
|
eleAnchorPt
|
Element anchor point. Should be one of 'beginning', 'center', 'end' Default: 'beginning' |
'beginning'
|
Returns:
Name | Type | Description |
---|---|---|
field |
FieldMesh
|
Instantiated fieldmesh |
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.from_superfish
classmethod
from_superfish(filename, type=None, geometry='cylindrical')
Class method to parse a superfish T7 style file.
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.interpolate
interpolate(key, points)
Interpolates the field data for the given key at specified points.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
key
|
str
|
The key representing the field data to interpolate. |
required |
points
|
numpy.ndarray of shape (3,) or (n, 3)
|
An array of n 3d points at which to interpolate the field data. The points should
be ordered according to |
required |
Returns:
Type | Description |
---|---|
ndarray
|
The interpolated field values at the specified points. |
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.interpolator
interpolator(key)
Returns an interpolator for a given field key.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
key
|
str
|
The key representing the field data to interpolate. Examples include: - 'Ez' for scaled/phased data - 'magneticField/y' for raw component data |
required |
Returns:
Type | Description |
---|---|
RegularGridInterpolator
|
An interpolator object that can be used to interpolate points. The points
to interpolate should be ordered according to |
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.plot
plot(component=None, *, cmap=None, nice=True, stream=False, mirror=None, density=2, linewidth=1, arrowsize=1, axes=None, return_figure=False, **kwargs)
Plots the specified component of the data, with various customization options for appearance and behavior.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
component
|
str
|
The component of the data to be plotted (e.g., 'Ex', 'B'). If None, defaults to 'B' for pure magetic fields, otherwise 'E' |
None
|
cmap
|
str or Colormap
|
The colormap to use for the plot. Defaults to a default colormap if not provided. |
None
|
stream
|
bool
|
If True, adds streamlines to the plot (useful for vector field visualization). Defaults to False. |
False
|
mirror
|
str
|
'r' symmetrizes the data in the r plane. Only for cylindrical plots with r = 0 on the edge of the data Defaults to None. |
None
|
density
|
float
|
The density of streamlines when |
2
|
linewidth
|
float
|
The line width for streamlines. Defaults to 1. |
1
|
arrowsize
|
float
|
The size of arrows for streamlines when |
1
|
axes
|
Axes
|
A matplotlib Axes object on which to draw the plot. If None, a new figure and axes will be created. |
None
|
return_figure
|
bool
|
If True, returns the matplotlib Figure object. Defaults to False. |
False
|
**kwargs
|
dict
|
Additional keyword arguments passed to the underlying plotting functions. |
{}
|
Returns:
Type | Description |
---|---|
Figure or None
|
Returns the matplotlib Figure object if |
Notes
- If
axes
is provided, the plot will be drawn on the given axes. - Symmetrizing the data is useful for visualizing symmetric datasets, but it modifies the data displayed.
- The
stream
parameter is intended for vector field visualization and works best with continuous data.
Examples:
Plot a single component with a specific colormap:
>>> obj.plot(component='x', cmap='viridis')
Plot with streamlines and return the figure:
>>> fig = obj.plot(stream=True, return_figure=True)
Symmetrize the data before plotting:
>>> obj.plot(symmetrize=True)
Customize the appearance of streamlines:
>>> obj.plot(stream=True, density=2, linewidth=0.5, arrowsize=2)
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.scaled_component
scaled_component(key)
Retruns a component scaled by the complex factor factor = scaleexp(iphase)
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.to_cylindrical
to_cylindrical()
Returns a new FieldMesh in cylindrical geometry.
If the current geometry is rectangular, this will use the y=0 slice.
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.units
units(key)
Returns the units of any key
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.write
write(h5, name=None)
Writes openPMD-beamphysics format to an open h5 handle, or new file if h5 is a str.
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.write_gpt
write_gpt(filePath, asci2gdf_bin=None, verbose=True)
Writes a GPT field file.
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.write_impact_emfield_cartesian
write_impact_emfield_cartesian(filename)
Writes Impact-T style 1Tv3.T7 file corresponding to
the 111: EMfldCart
element.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
filename
|
str
|
Path to the file where the field data will be written. |
required |
Source code in pmd_beamphysics/fields/fieldmesh.py
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pmd_beamphysics.FieldMesh.write_superfish
write_superfish(filePath, verbose=False)
Write a Superfish T7 file.
For static fields, a Poisson T7 file is written.
For dynamic (harmonic /= 0
) fields, a Fish T7 file is written
Source code in pmd_beamphysics/fields/fieldmesh.py
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